This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by H5hut configure 1.99.12, which was generated by GNU Autoconf 2.63. Invocation command line was $ ./configure --enable-parallel --enable-fortran --with-hdf5=/usr/local/Cellar/hdf5/1.8.14 --prefix=/Users/xguo/tools/h5hut ## --------- ## ## Platform. ## ## --------- ## hostname = Xiaohus-MacBook-Pro-2.local uname -m = x86_64 uname -r = 14.4.0 uname -s = Darwin uname -v = Darwin Kernel Version 14.4.0: Thu May 28 11:35:04 PDT 2015; root:xnu-2782.30.5~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 14.4.0: Thu May 28 11:35:04 PDT 2015; root:xnu-2782.30.5~1/RELEASE_X86_64 Kernel configured for up to 4 processors. 2 processors are physically available. 4 processors are logically available. Processor type: i486 (Intel 80486) Processors active: 0 1 2 3 Primary memory available: 8.00 gigabytes Default processor set: 242 tasks, 1010 threads, 4 processors Load average: 1.44, Mach factor: 2.62 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/texbin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /opt/X11/bin PATH: /usr/texbin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2132: checking for a BSD-compatible install configure:2200: result: /usr/bin/install -c configure:2211: checking whether build environment is sane configure:2271: result: yes configure:2299: WARNING: `missing' script is too old or missing configure:2412: checking for a thread-safe mkdir -p configure:2451: result: ./install-sh -c -d configure:2464: checking for gawk configure:2494: result: no configure:2464: checking for mawk configure:2494: result: no configure:2464: checking for nawk configure:2494: result: no configure:2464: checking for awk configure:2480: found /usr/bin/awk configure:2491: result: awk configure:2502: checking whether make sets $(MAKE) configure:2524: result: yes configure:2780: checking build system type configure:2798: result: x86_64-apple-darwin14.4.0 configure:2820: checking host system type configure:2835: result: x86_64-apple-darwin14.4.0 configure:2857: checking whether make sets $(MAKE) configure:2879: result: yes configure:2890: checking if debug is enabled configure:2899: result: no configure:2966: checking for mpicc configure:2982: found /usr/local/bin/mpicc configure:2993: result: mpicc configure:3027: checking for C compiler version configure:3035: mpicc --version >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:3039: $? = 0 configure:3046: mpicc -v >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:3050: $? = 0 configure:3057: mpicc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3061: $? = 1 configure:3084: checking for C compiler default output file name configure:3106: mpicc conftest.c >&5 configure:3110: $? = 0 configure:3148: result: a.out configure:3167: checking whether the C compiler works configure:3177: ./a.out configure:3181: $? = 0 configure:3200: result: yes configure:3207: checking whether we are cross compiling configure:3209: result: no configure:3212: checking for suffix of executables configure:3219: mpicc -o conftest conftest.c >&5 configure:3223: $? = 0 configure:3249: result: configure:3255: checking for suffix of object files configure:3281: mpicc -c conftest.c >&5 configure:3285: $? = 0 configure:3310: result: o configure:3314: checking whether we are using the GNU C compiler configure:3343: mpicc -c conftest.c >&5 configure:3350: $? = 0 configure:3367: result: yes configure:3376: checking whether mpicc accepts -g configure:3406: mpicc -c -g conftest.c >&5 configure:3413: $? = 0 configure:3514: result: yes configure:3531: checking for mpicc option to accept ISO C89 configure:3605: mpicc -c -g -O2 conftest.c >&5 configure:3612: $? = 0 configure:3635: result: none needed configure:3664: checking for style of include used by make configure:3692: result: GNU configure:3717: checking dependency style of mpicc configure:3827: result: none configure:3901: checking for mpic++ configure:3917: found /usr/local/bin/mpic++ configure:3928: result: mpic++ configure:3955: checking for C++ compiler version configure:3963: mpic++ --version >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:3967: $? = 0 configure:3974: mpic++ -v >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:3978: $? = 0 configure:3985: mpic++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3989: $? = 1 configure:3992: checking whether we are using the GNU C++ compiler configure:4021: mpic++ -c conftest.cpp >&5 configure:4028: $? = 0 configure:4045: result: yes configure:4054: checking whether mpic++ accepts -g configure:4084: mpic++ -c -g conftest.cpp >&5 configure:4091: $? = 0 configure:4192: result: yes configure:4217: checking dependency style of mpic++ configure:4327: result: none configure:4344: checking for /usr/local/bin/mpicc option to accept ISO C99 configure:4503: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:4510: $? = 0 configure:4533: result: none needed configure:4567: checking for a BSD-compatible install configure:4635: result: /usr/bin/install -c configure:4650: checking for gawk configure:4677: result: awk configure:4715: checking for a sed that does not truncate output configure:4781: result: /usr/bin/sed configure:4799: checking for grep that handles long lines and -e configure:4859: result: /usr/bin/grep configure:4864: checking for egrep configure:4928: result: /usr/bin/grep -E configure:4933: checking for fgrep configure:4997: result: /usr/bin/grep -F configure:5032: checking for ld used by /usr/local/bin/mpicc configure:5099: result: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld configure:5108: checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld configure:5123: result: no configure:5135: checking for BSD- or MS-compatible name lister (nm) configure:5184: result: /usr/bin/nm configure:5302: checking the name lister (/usr/bin/nm) interface configure:5309: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:5312: /usr/bin/nm "conftest.o" configure:5315: output 00000000000001e4 S _some_variable configure:5322: result: BSD nm configure:5325: checking whether ln -s works configure:5329: result: yes configure:5337: checking the maximum length of command line arguments configure:5457: result: 196608 configure:5474: checking whether the shell understands some XSI constructs configure:5484: result: yes configure:5488: checking whether the shell understands "+=" configure:5494: result: yes configure:5529: checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files configure:5536: result: -r configure:5605: checking for objdump configure:5635: result: no configure:5664: checking how to recognize dependent libraries configure:5860: result: pass_all configure:5920: checking for ar configure:5936: found /usr/bin/ar configure:5947: result: ar configure:6025: checking for strip configure:6041: found /usr/bin/strip configure:6052: result: strip configure:6124: checking for ranlib configure:6140: found /usr/bin/ranlib configure:6151: result: ranlib configure:6241: checking command to parse /usr/bin/nm output from /usr/local/bin/mpicc object configure:6359: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:6362: $? = 0 configure:6366: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:6369: $? = 0 cannot find nm_test_var in conftest.nm configure:6359: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:6362: $? = 0 configure:6366: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' \> conftest.nm configure:6369: $? = 0 configure:6423: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:6426: $? = 0 configure:6464: result: ok configure:6758: checking for dsymutil configure:6774: found /usr/bin/dsymutil configure:6785: result: dsymutil configure:6850: checking for nmedit configure:6866: found /usr/bin/nmedit configure:6877: result: nmedit configure:6942: checking for lipo configure:6958: found /usr/bin/lipo configure:6969: result: lipo configure:7034: checking for otool configure:7050: found /usr/bin/otool configure:7061: result: otool configure:7126: checking for otool64 configure:7156: result: no configure:7201: checking for -single_module linker flag /usr/local/bin/mpicc -g -O2 -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:7228: result: yes configure:7230: checking for -exported_symbols_list linker flag configure:7260: /usr/local/bin/mpicc -o conftest -g -O2 -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 configure:7267: $? = 0 configure:7289: result: yes configure:7331: checking how to run the C preprocessor configure:7371: /usr/local/bin/mpicc -E conftest.c configure:7378: $? = 0 configure:7409: /usr/local/bin/mpicc -E conftest.c conftest.c:10:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:7416: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | /* end confdefs.h. */ | #include configure:7449: result: /usr/local/bin/mpicc -E configure:7478: /usr/local/bin/mpicc -E conftest.c configure:7485: $? = 0 configure:7516: /usr/local/bin/mpicc -E conftest.c conftest.c:10:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:7523: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | /* end confdefs.h. */ | #include configure:7563: checking for ANSI C header files configure:7593: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7600: $? = 0 configure:7699: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 configure:7703: $? = 0 configure:7709: ./conftest configure:7713: $? = 0 configure:7731: result: yes configure:7755: checking for sys/types.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for sys/stat.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for stdlib.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for string.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for memory.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for strings.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for inttypes.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for stdint.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7755: checking for unistd.h configure:7776: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7783: $? = 0 configure:7800: result: yes configure:7818: checking for dlfcn.h configure:7839: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:7846: $? = 0 configure:7863: result: yes configure:7990: checking for C++ compiler version configure:7998: /usr/local/bin/mpic++ --version >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:8002: $? = 0 configure:8009: /usr/local/bin/mpic++ -v >&5 Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) Target: x86_64-apple-darwin14.4.0 Thread model: posix configure:8013: $? = 0 configure:8020: /usr/local/bin/mpic++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:8024: $? = 1 configure:8027: checking whether we are using the GNU C++ compiler configure:8080: result: yes configure:8089: checking whether /usr/local/bin/mpic++ accepts -g configure:8227: result: yes configure:8252: checking dependency style of /usr/local/bin/mpic++ configure:8362: result: none configure:8385: checking how to run the C++ preprocessor configure:8421: /usr/local/bin/mpic++ -E conftest.cpp configure:8428: $? = 0 configure:8459: /usr/local/bin/mpic++ -E conftest.cpp conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:8466: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:8499: result: /usr/local/bin/mpic++ -E configure:8528: /usr/local/bin/mpic++ -E conftest.cpp configure:8535: $? = 0 configure:8566: /usr/local/bin/mpic++ -E conftest.cpp conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:8573: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:8786: checking for objdir configure:8801: result: .libs configure:9097: checking if /usr/local/bin/mpicc supports -fno-rtti -fno-exceptions configure:9115: /usr/local/bin/mpicc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 configure:9119: $? = 0 configure:9132: result: yes configure:9152: checking for /usr/local/bin/mpicc option to produce PIC configure:9424: result: -fno-common -DPIC configure:9436: checking if /usr/local/bin/mpicc PIC flag -fno-common -DPIC works configure:9454: /usr/local/bin/mpicc -c -g -O2 -fno-common -DPIC -DPIC conftest.c >&5 configure:9458: $? = 0 configure:9471: result: yes configure:9495: checking if /usr/local/bin/mpicc static flag -static works configure:9523: result: no configure:9538: checking if /usr/local/bin/mpicc supports -c -o file.o configure:9559: /usr/local/bin/mpicc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:9563: $? = 0 configure:9585: result: yes configure:9593: checking if /usr/local/bin/mpicc supports -c -o file.o configure:9640: result: yes configure:9673: checking whether the /usr/local/bin/mpicc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:10747: result: yes configure:10986: checking dynamic linker characteristics configure:11672: result: darwin14.4.0 dyld configure:11774: checking how to hardcode library paths into programs configure:11799: result: immediate configure:12632: checking whether stripping libraries is possible configure:12646: result: yes configure:12672: checking if libtool supports shared libraries configure:12674: result: yes configure:12677: checking whether to build shared libraries configure:12698: result: no configure:12701: checking whether to build static libraries configure:12705: result: yes configure:12855: checking for ld used by /usr/local/bin/mpic++ configure:12922: result: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld configure:12931: checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld configure:12946: result: no configure:13001: checking whether the /usr/local/bin/mpic++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:13976: result: yes configure:14004: /usr/local/bin/mpic++ -c -g -O2 conftest.cpp >&5 configure:14007: $? = 0 configure:14189: checking for /usr/local/bin/mpic++ option to produce PIC configure:14506: result: -fno-common -DPIC configure:14515: checking if /usr/local/bin/mpic++ PIC flag -fno-common -DPIC works configure:14533: /usr/local/bin/mpic++ -c -g -O2 -fno-common -DPIC -DPIC conftest.cpp >&5 configure:14537: $? = 0 configure:14550: result: yes configure:14571: checking if /usr/local/bin/mpic++ static flag -static works configure:14599: result: no configure:14611: checking if /usr/local/bin/mpic++ supports -c -o file.o configure:14632: /usr/local/bin/mpic++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14636: $? = 0 configure:14658: result: yes configure:14663: checking if /usr/local/bin/mpic++ supports -c -o file.o configure:14710: result: yes configure:14740: checking whether the /usr/local/bin/mpic++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:14766: result: yes configure:14903: checking dynamic linker characteristics configure:15537: result: darwin14.4.0 dyld configure:15588: checking how to hardcode library paths into programs configure:15613: result: immediate configure:15699: checking fcntl.h usability configure:15716: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:15723: $? = 0 configure:15737: result: yes configure:15741: checking fcntl.h presence configure:15756: /usr/local/bin/mpicc -E conftest.c configure:15763: $? = 0 configure:15777: result: yes configure:15810: checking for fcntl.h configure:15819: result: yes configure:15699: checking limits.h usability configure:15716: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:15723: $? = 0 configure:15737: result: yes configure:15741: checking limits.h presence configure:15756: /usr/local/bin/mpicc -E conftest.c configure:15763: $? = 0 configure:15777: result: yes configure:15810: checking for limits.h configure:15819: result: yes configure:15688: checking for stdint.h configure:15695: result: yes configure:15688: checking for stdlib.h configure:15695: result: yes configure:15688: checking for string.h configure:15695: result: yes configure:15699: checking sys/ioctl.h usability configure:15716: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:15723: $? = 0 configure:15737: result: yes configure:15741: checking sys/ioctl.h presence configure:15756: /usr/local/bin/mpicc -E conftest.c configure:15763: $? = 0 configure:15777: result: yes configure:15810: checking for sys/ioctl.h configure:15819: result: yes configure:15688: checking for unistd.h configure:15695: result: yes configure:15836: checking for stdbool.h that conforms to C99 configure:15931: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:56:12: warning: address of 's' will always evaluate to 'true' [-Wpointer-bool-conversion] bool e = &s; ~ ^ 1 warning generated. configure:15938: $? = 0 configure:15953: result: yes configure:15955: checking for _Bool configure:15983: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:15990: $? = 0 configure:16017: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:65:20: error: expected expression if (sizeof ((_Bool))) ^ 1 error generated. configure:16024: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:16047: result: yes configure:16066: checking for inline configure:16092: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16099: $? = 0 configure:16117: result: inline configure:16137: checking for int16_t configure:16168: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16175: $? = 0 configure:16204: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int16_t) ((((int16_t) 1 << (16 - 2)) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:16211: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static int test_array [1 - 2 * !((int16_t) ((((int16_t) 1 << (16 - 2)) - 1) * 2 + 1) | < (int16_t) ((((int16_t) 1 << (16 - 2)) - 1) * 2 + 2))]; | test_array [0] = 0 | | ; | return 0; | } configure:16240: result: yes configure:16253: checking for int32_t configure:16284: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16291: $? = 0 configure:16320: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int32_t) ((((int32_t) 1 << (32 - 2)) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:16327: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static int test_array [1 - 2 * !((int32_t) ((((int32_t) 1 << (32 - 2)) - 1) * 2 + 1) | < (int32_t) ((((int32_t) 1 << (32 - 2)) - 1) * 2 + 2))]; | test_array [0] = 0 | | ; | return 0; | } configure:16356: result: yes configure:16369: checking for int64_t configure:16400: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16407: $? = 0 configure:16436: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:24: error: 'test_array' declared as an array with a negative size static int test_array [1 - 2 * !((int64_t) ((((int64_t) 1 << (64 - 2)) - 1) * 2 + 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. configure:16443: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | static int test_array [1 - 2 * !((int64_t) ((((int64_t) 1 << (64 - 2)) - 1) * 2 + 1) | < (int64_t) ((((int64_t) 1 << (64 - 2)) - 1) * 2 + 2))]; | test_array [0] = 0 | | ; | return 0; | } configure:16472: result: yes configure:16484: checking for size_t configure:16512: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16519: $? = 0 configure:16546: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:21: error: expected expression if (sizeof ((size_t))) ^ 1 error generated. configure:16553: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:16576: result: yes configure:16588: checking for ssize_t configure:16616: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16623: $? = 0 configure:16650: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:22: error: expected expression if (sizeof ((ssize_t))) ^ 1 error generated. configure:16657: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:16680: result: yes configure:16693: checking for uint16_t configure:16724: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16731: $? = 0 configure:16752: result: yes configure:16766: checking for uint32_t configure:16797: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16804: $? = 0 configure:16825: result: yes configure:16843: checking for uint64_t configure:16874: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16881: $? = 0 configure:16902: result: yes configure:16919: checking for ptrdiff_t configure:16947: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 configure:16954: $? = 0 configure:16981: /usr/local/bin/mpicc -c -g -O2 conftest.c >&5 conftest.c:67:24: error: expected expression if (sizeof ((ptrdiff_t))) ^ 1 error generated. configure:16988: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "H5hut" | #define PACKAGE_TARNAME "H5hut" | #define PACKAGE_VERSION "1.99.12" | #define PACKAGE_STRING "H5hut 1.99.12" | #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" | #define PACKAGE "H5hut" | #define VERSION "1.99.12" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_FCNTL_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:17011: result: yes configure:17029: checking for stdlib.h configure:17036: result: yes configure:17175: checking for GNU libc compatible malloc configure:17209: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 configure:17213: $? = 0 configure:17219: ./conftest configure:17223: $? = 0 configure:17240: result: yes configure:17273: checking for stdlib.h configure:17280: result: yes configure:17419: checking for GNU libc compatible realloc configure:17453: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 configure:17457: $? = 0 configure:17463: ./conftest configure:17467: $? = 0 configure:17484: result: yes configure:17522: checking for memmove configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:59:6: warning: incompatible redeclaration of library function 'memmove' [-Wincompatible-library-redeclaration] char memmove (); ^ conftest.c:59:6: note: 'memmove' is a builtin with type 'void *(void *, const void *, unsigned long)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for memset configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:60:6: warning: incompatible redeclaration of library function 'memset' [-Wincompatible-library-redeclaration] char memset (); ^ conftest.c:60:6: note: 'memset' is a builtin with type 'void *(void *, int, unsigned long)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for pow configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:61:6: warning: incompatible redeclaration of library function 'pow' [-Wincompatible-library-redeclaration] char pow (); ^ conftest.c:61:6: note: 'pow' is a builtin with type 'double (double, double)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for strchr configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:62:6: warning: incompatible redeclaration of library function 'strchr' [-Wincompatible-library-redeclaration] char strchr (); ^ conftest.c:62:6: note: 'strchr' is a builtin with type 'char *(const char *, int)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for strdup configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:63:6: warning: incompatible redeclaration of library function 'strdup' [-Wincompatible-library-redeclaration] char strdup (); ^ conftest.c:63:6: note: 'strdup' is a builtin with type 'char *(const char *)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for strerror configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:64:6: warning: incompatible redeclaration of library function 'strerror' [-Wincompatible-library-redeclaration] char strerror (); ^ conftest.c:64:6: note: 'strerror' is a builtin with type 'char *(int)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17522: checking for strstr configure:17578: /usr/local/bin/mpicc -o conftest -g -O2 conftest.c >&5 conftest.c:65:6: warning: incompatible redeclaration of library function 'strstr' [-Wincompatible-library-redeclaration] char strstr (); ^ conftest.c:65:6: note: 'strstr' is a builtin with type 'char *(const char *, const char *)' 1 warning generated. configure:17585: $? = 0 configure:17607: result: yes configure:17654: checking if C interface enabled configure:17657: result: yes configure:17665: checking if fortran interface enabled configure:17668: result: yes configure:17725: checking for mpif90 configure:17741: found /usr/local/bin/mpif90 configure:17752: result: mpif90 configure:17778: checking for Fortran compiler version configure:17786: mpif90 --version >&5 GNU Fortran (Homebrew gcc 5.1.0) 5.1.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:17790: $? = 0 configure:17797: mpif90 -v >&5 Using built-in specs. COLLECT_GCC=/usr/local/bin/gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.1.0/libexec/gcc/x86_64-apple-darwin14.3.0/5.1.0/lto-wrapper Target: x86_64-apple-darwin14.3.0 Configured with: ../configure --build=x86_64-apple-darwin14.3.0 --prefix=/usr/local/Cellar/gcc/5.1.0 --libdir=/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.1.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib Thread model: posix gcc version 5.1.0 (Homebrew gcc 5.1.0) configure:17801: $? = 0 configure:17808: mpif90 -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:17812: $? = 1 configure:17820: checking whether we are using the GNU Fortran compiler configure:17839: mpif90 -c conftest.F >&5 configure:17846: $? = 0 configure:17863: result: yes configure:17869: checking whether mpif90 accepts -g configure:17886: mpif90 -c -g conftest.f >&5 configure:17893: $? = 0 configure:17909: result: yes configure:18040: checking for Fortran compiler version configure:18048: mpif90 --version >&5 GNU Fortran (Homebrew gcc 5.1.0) 5.1.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:18052: $? = 0 configure:18059: mpif90 -v >&5 Using built-in specs. COLLECT_GCC=/usr/local/bin/gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.1.0/libexec/gcc/x86_64-apple-darwin14.3.0/5.1.0/lto-wrapper Target: x86_64-apple-darwin14.3.0 Configured with: ../configure --build=x86_64-apple-darwin14.3.0 --prefix=/usr/local/Cellar/gcc/5.1.0 --libdir=/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.1.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib Thread model: posix gcc version 5.1.0 (Homebrew gcc 5.1.0) configure:18063: $? = 0 configure:18070: mpif90 -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:18074: $? = 1 configure:18082: checking whether we are using the GNU Fortran compiler configure:18125: result: yes configure:18131: checking whether mpif90 accepts -g configure:18171: result: yes configure:18304: checking if libtool supports shared libraries configure:18306: result: yes configure:18309: checking whether to build shared libraries configure:18329: result: no configure:18332: checking whether to build static libraries configure:18336: result: yes configure:18362: mpif90 -c -g -O2 conftest.f >&5 configure:18365: $? = 0 configure:18475: checking for mpif90 option to produce PIC configure:18747: result: -fno-common configure:18756: checking if mpif90 PIC flag -fno-common works configure:18774: mpif90 -c -g -O2 -fno-common conftest.f >&5 configure:18778: $? = 0 configure:18791: result: yes configure:18812: checking if mpif90 static flag -static works configure:18840: result: no configure:18852: checking if mpif90 supports -c -o file.o configure:18873: mpif90 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:18877: $? = 0 configure:18899: result: yes configure:18904: checking if mpif90 supports -c -o file.o configure:18951: result: yes configure:18981: checking whether the mpif90 linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries configure:20035: result: yes configure:20172: checking dynamic linker characteristics configure:20796: result: darwin14.4.0 dyld configure:20847: checking how to hardcode library paths into programs configure:20872: result: immediate configure:21183: checking symbol convention in object files configure:21192: result: ok configure:21209: checking if large indices are enabled configure:21216: result: no configure:21221: checking if parallel interface enabled configure:21224: result: yes configure:21313: checking for compress2 in -lz configure:21348: /usr/local/bin/mpicc -o conftest -g -O2 -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -I/usr/local/Cellar/hdf5/1.8.14/include -L/usr/local/Cellar/hdf5/1.8.14/lib conftest.c -lz >&5 configure:21355: $? = 0 configure:21376: result: yes configure:21388: checking for H5open in -lhdf5 configure:21423: /usr/local/bin/mpicc -o conftest -g -O2 -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -I/usr/local/Cellar/hdf5/1.8.14/include -L/usr/local/Cellar/hdf5/1.8.14/lib conftest.c -lhdf5 -lz >&5 configure:21430: $? = 0 configure:21451: result: yes configure:21471: checking for lustre API configure:21473: result: configure:2757: checking looking in /usr ... configure:2765: result: no configure:2757: checking looking in /usr/local ... configure:2765: result: no configure:2757: checking looking in /usr/local/lustre ... configure:2765: result: no configure:2757: checking looking in /opt/lustre ... configure:2765: result: no configure:21492: WARNING: Couldn't locate the lustre API... building without support for lustre striping! configure:21505: checking if we have to compile the VTK to H5hut grid converter configure:21512: result: no configure:21710: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by H5hut config.status 1.99.12, which was generated by GNU Autoconf 2.63. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Xiaohus-MacBook-Pro-2.local config.status:1149: creating Makefile config.status:1149: creating src/Makefile config.status:1149: creating src/h5core/Makefile config.status:1149: creating src/include/Makefile config.status:1149: creating src/include/h5core/Makefile config.status:1149: creating src/C/Makefile config.status:1149: creating src/Fortran/Makefile config.status:1149: creating test/Makefile config.status:1149: creating doc/Makefile config.status:1149: creating tools/Makefile config.status:1149: creating tools/h5hutcc config.status:1149: creating tools/vtk2h5grid/Makefile config.status:1149: creating config.h config.status:1371: config.h is unchanged config.status:1423: executing depfiles commands config.status:1423: executing libtool commands configure:24451: result: configure:24453: result: Summary: configure:24455: result: configure:24457: result: Host OS: darwin14.4.0 configure:24459: result: Host CPU: x86_64 configure:24461: result: Host vendor: apple configure:24463: result: CC = /usr/local/bin/mpicc configure:24465: result: CXX = /usr/local/bin/mpic++ configure:24467: result: FC = /usr/local/bin/mpif90 configure:24469: result: CFLAGS = -g -O2 configure:24471: result: FFLAGS = configure:24473: result: AM_CPPFLAGS = -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -I/usr/local/Cellar/hdf5/1.8.14/include configure:24475: result: AM_LDFLAGS = -L/usr/local/Cellar/hdf5/1.8.14/lib configure:24477: result: LIBS = -lhdf5 -lz -lm configure:24479: result: HDF5_PREFIX = /usr/local/Cellar/hdf5/1.8.14 configure:24481: result: LUSTREROOT = configure:24483: result: ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin14.4.0 ac_cv_c_compiler_gnu=yes ac_cv_c_inline=inline ac_cv_c_int16_t=yes ac_cv_c_int32_t=yes ac_cv_c_int64_t=yes ac_cv_c_uint16_t=yes ac_cv_c_uint32_t=yes ac_cv_c_uint64_t=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_fc_compiler_gnu=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memmove=yes ac_cv_func_memset=yes ac_cv_func_pow=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strerror=yes ac_cv_func_strstr=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_ioctl_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-apple-darwin14.4.0 ac_cv_lib_hdf5_H5open=yes ac_cv_lib_z_compress2=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CPP='/usr/local/bin/mpicc -E' ac_cv_prog_CXXCPP='/usr/local/bin/mpic++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_CXX=mpic++ ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_FC=mpif90 ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_type__Bool=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none lt_cv_apple_cc_single_mod=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld lt_cv_path_LDCXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld lt_cv_path_NM=/usr/bin/nm lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=196608 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='tar' AM_CPPFLAGS=' -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -I/usr/local/Cellar/hdf5/1.8.14/include' AM_LDFLAGS=' -L/usr/local/Cellar/hdf5/1.8.14/lib' AR='ar' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake-1.11' AWK='awk' CC='/usr/local/bin/mpicc' CCDEPMODE='depmode=none' CFLAGS='-g -O2' CPP='/usr/local/bin/mpicc -E' CPPFLAGS=' -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -I/usr/local/Cellar/hdf5/1.8.14/include' CXX='/usr/local/bin/mpic++' CXXCPP='/usr/local/bin/mpic++ -E' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DSYMUTIL='dsymutil' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_C_FALSE='#' ENABLE_C_TRUE='' ENABLE_DEBUG_FALSE='' ENABLE_DEBUG_TRUE='#' ENABLE_EXPERIMENTAL_FALSE='' ENABLE_EXPERIMENTAL_TRUE='#' ENABLE_FORTRAN_FALSE='#' ENABLE_FORTRAN_TRUE='' ENABLE_PARALLEL_FALSE='#' ENABLE_PARALLEL_TRUE='' ENABLE_VTKCONVERTER_FALSE='' ENABLE_VTKCONVERTER_TRUE='#' EXEEXT='' FC='/usr/local/bin/mpif90' FCFLAGS='-g -O2' FFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' HDF5_PREFIX='/usr/local/Cellar/hdf5/1.8.14' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld' LDFLAGS=' -L/usr/local/Cellar/hdf5/1.8.14/lib' LIBOBJS='' LIBS='-lhdf5 -lz -lm' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='makeinfo' MKDIR_P='./install-sh -c -d' NM='/usr/bin/nm' NMEDIT='nmedit' OBJDUMP='false' OBJEXT='o' OTOOL64=':' OTOOL='otool' PACKAGE='H5hut' PACKAGE_BUGREPORT='h5part@lists.psi.ch' PACKAGE_NAME='H5hut' PACKAGE_STRING='H5hut 1.99.12' PACKAGE_TARNAME='H5hut' PACKAGE_VERSION='1.99.12' PATH_SEPARATOR=':' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' VERSION='1.99.12' ac_ct_CC='mpicc' ac_ct_CXX='mpic++' ac_ct_DUMPBIN='' ac_ct_FC='mpif90' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin14.4.0' build_alias='' build_cpu='x86_64' build_os='darwin14.4.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-apple-darwin14.4.0' host_alias='' host_cpu='x86_64' host_os='darwin14.4.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/xguo/tools/H5hut-1.99.13/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='/bin/echo' mandir='${datarootdir}/man' mkdir_p='$(top_builddir)/./install-sh -c -d' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/xguo/tools/h5hut' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "H5hut" #define PACKAGE_TARNAME "H5hut" #define PACKAGE_VERSION "1.99.12" #define PACKAGE_STRING "H5hut 1.99.12" #define PACKAGE_BUGREPORT "h5part@lists.psi.ch" #define PACKAGE "H5hut" #define VERSION "1.99.12" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_FCNTL_H 1 #define HAVE_LIMITS_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_UNISTD_H 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_PTRDIFF_T 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_STDLIB_H 1 #define HAVE_REALLOC 1 #define HAVE_MEMMOVE 1 #define HAVE_MEMSET 1 #define HAVE_POW 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRERROR 1 #define HAVE_STRSTR 1 #define MY_BUILD_VENDOR "apple" #define MY_BUILD_CPU "x86_64" #define MY_BUILD_OS "darwin14.4.0" #define MY_GNUNAME "x86_64-apple-darwin14.4.0" #define MY_UNAME "" #define HAVE_LIBZ 1 #define HAVE_LIBHDF5 1 configure: exit 0