The OPAL Discussion Forum

["Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>]

Hi Chris this seams to me like a gcc problem on your rhel-6 box.

Can you maybe use a binary package for gcc?

Andreas

On 18 Oct 2017, at 06:55, Christopher Mayes <cmayes AT stanford.edu> wrote:

Hi Nicole, I checked out and compiled everything today, exactly in the order on the webpage. Attached is the complete log after make:

Does this help?

Chris

On Oct 17, 2017, at 8:55 PM, Nicole Neveu <nneveu AT hawk.iit.edu> wrote:

Chris,

Did you compile with or without the SAAMG solver?

Which git branch did you check out?

It looks like a library/link error. Did you have trouble compiling any of the libraries?

Do you have zlib or szip in your library path?

Was there any stdout before this error, or did this pop up right after you called make?

Can you show us the output after cmake? i.e. pipe it to a text file or something.

Thanks,

Nicole

On Tue, Oct 17, 2017 at 10:20 PM, Christopher Mayes <cmayes AT stanford.edu> wrote:

Hi Nicole, I just followed the instructions verbatim for GCC 5.4:

https://gitlab.psi.ch/OPAL/src/wikis/For%20Developers/Compile%20OPAL%20on%20RHEL6

Thanks,

Chris

On Oct 17, 2017, at 8:14 PM, Nicole Neveu <nneveu AT hawk.iit.edu> wrote:

Hi all,

I've been building OPAL on our cluster a lot lately....maybe I can help?

What did your cmake command look like? Are you using modules or your own libraries?

Thanks,

Nicole

On Tue, Oct 17, 2017 at 1:54 PM, Adelmann Andreas (PSI) <andreas.adelmann AT psi.ch> wrote:

Hi  Chris no idea what this is. I forwarded this to the mailing list and 

to Achim, in charge of the build system.

Cheers Andreas 

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Begin forwarded message:

From: Christopher Mayes <cmayes AT stanford.edu>

Subject: Error compiling GCC 5.4 for opal on RHEL-6

Date: 17 October 2017 at 19:48:08 GMT+2

To: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>

Hi Andreas,

I’m following the instructions for compiling OPAL, and ran into the error with GCC. Any idea what to do?

Thanks,

Chris

g++   -g -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common  -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc  -o build/genmatch \

    build/genmatch.o ../build-x86_64-unknown-linux-gnu/libcpp/libcpp.a build/errors.o build/vec.o build/hash-table.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.a

g++   -g -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common  -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc  -o build/genpreds \

    build/genpreds.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.a

g++   -g -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common  -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc  -o build/genflags \

    build/genflags.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.a

g++   -g -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common  -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc  -o build/genconditions \

    build/genconditions.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.a

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (648)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (571)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (792)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (817)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (608)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (594)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (636)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (842)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (800)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (530)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (622)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (553)

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: /afs/slac.stanford.edu/package/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/gcc-5.3.0-cv3yxpmklrqf7dl3zgvtapwy3l5jt7hz/lib64/../lib64/libstdc++.a(del_op.o)(.debug_info+0x2e6): reloc against `.debug_str': error 2

/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: final link failed: Nonrepresentable section on output

collect2: error: ld returned 1 exit status

make[3]: *** [build/genmatch] Error 1

make[3]: *** Waiting for unfinished jobs....

rm gcc.pod

make[3]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build/gcc'

make[2]: *** [all-stage1-gcc] Error 2

make[2]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build'

make[1]: *** [stage1-bubble] Error 2

make[1]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build'

make: *** [all] Error 2

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