opal AT lists.psi.ch
Subject: The OPAL Discussion Forum
List archive
- From: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>
- To: Christopher Mayes <cmayes AT stanford.edu>
- Cc: Nicole Neveu <nneveu AT hawk.iit.edu>, "opal AT lists.psi.ch" <Opal AT lists.psi.ch>, "Gsell Achim (PSI)" <achim.gsell AT psi.ch>
- Subject: Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6
- Date: Wed, 18 Oct 2017 05:21:57 +0000
- Accept-language: en-US, de-CH
Hi Chris this seams to me like a gcc problem on your rhel-6 box.
Can you maybe use a binary package for gcc?
Andreas
Hi Nicole, I checked out and compiled everything today, exactly in the order on the webpage. Attached is the complete log after make:
Does this help?
Chris
On Oct 17, 2017, at 8:55 PM, Nicole Neveu <nneveu AT hawk.iit.edu> wrote:
Chris,
Did you compile with or without the SAAMG solver?Which git branch did you check out?
It looks like a library/link error. Did you have trouble compiling any of the libraries?Do you have zlib or szip in your library path?
Was there any stdout before this error, or did this pop up right after you called make?Can you show us the output after cmake? i.e. pipe it to a text file or something.
Thanks,
Nicole
On Tue, Oct 17, 2017 at 10:20 PM, Christopher Mayes <cmayes AT stanford.edu> wrote:
Hi Nicole, I just followed the instructions verbatim for GCC 5.4:
Thanks,
Chris
On Oct 17, 2017, at 8:14 PM, Nicole Neveu <nneveu AT hawk.iit.edu> wrote:
Hi all,
I've been building OPAL on our cluster a lot lately....maybe I can help?
What did your cmake command look like? Are you using modules or your own libraries?
Thanks,
Nicole
On Tue, Oct 17, 2017 at 1:54 PM, Adelmann Andreas (PSI) <andreas.adelmann AT psi.ch> wrote:
Hi Chris no idea what this is. I forwarded this to the mailing list andto Achim, in charge of the build system.
Cheers Andreas
------
Dr. sc. math. Andreas (Andy) Adelmann
Staff Scientist
Paul Scherrer Institut WBBA/219 CH-5232 Villigen PSI
Phone Office: xx41 56 310 42 33 Fax: xx41 56 310 31 91
Phone Home: xx41 62 891 91 44
-------------------------------------------------------
Friday: ETH HPK G 28 +41 44 632 75 22
============================================
The more exotic, the more abstract the knowledge,
the more profound will be its consequences.
Leon Lederman
============================================
Begin forwarded message:
From: Christopher Mayes <cmayes AT stanford.edu>
Subject: Error compiling GCC 5.4 for opal on RHEL-6
Date: 17 October 2017 at 19:48:08 GMT+2
To: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>
Hi Andreas,
I’m following the instructions for compiling OPAL, and ran into the error with GCC. Any idea what to do?
Thanks,
Chris
g++ -g -DIN_GCC -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc -o build/genmatch \build/genmatch.o ../build-x86_64-unknown-linux-gnu/libcpp/libcpp.a build/errors.o build/vec.o build/hash-table.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.ag++ -g -DIN_GCC -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc -o build/genpreds \build/genpreds.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.ag++ -g -DIN_GCC -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc -o build/genflags \build/genflags.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.ag++ -g -DIN_GCC -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wno-format -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -fno-common -DHAVE_CONFIG_H -DGENERATOR_FILE -static-libstdc++ -static-libgcc -o build/genconditions \build/genconditions.o build/rtl.o build/read-rtl.o build/ggc-none.o build/vec.o build/min-insn-modes.o build/gensupport.o build/print-rtl.o build/read-md.o build/errors.o ../build-x86_64-unknown-linux-gnu/libiberty/libiberty.a/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (648)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (571)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (792)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (817)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (608)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (594)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (636)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (842)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (800)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (530)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (622)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: del_op.o: access beyond end of merged section (553)/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: /afs/slac.stanford.edu/package/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/gcc-5.3.0-cv3yxpmklrqf7dl3zgvtapwy3l5jt7hz/lib64/../lib64/libstdc++.a(del_op.o)(.debug_info+0x2e6): reloc against `.debug_str': error 2/opt/rh/devtoolset-4/root/usr/libexec/gcc/x86_64-redhat-linux/5.3.1/ld: final link failed: Nonrepresentable section on outputcollect2: error: ld returned 1 exit statusmake[3]: *** [build/genmatch] Error 1make[3]: *** Waiting for unfinished jobs....rm gcc.podmake[3]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build/gcc'make[2]: *** [all-stage1-gcc] Error 2make[2]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build'make[1]: *** [stage1-bubble] Error 2make[1]: Leaving directory `/afs/slac.stanford.edu/u/ad/cmayes/OPAL/src/gcc/build'make: *** [all] Error 2
<log.txt>
- [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Adelmann Andreas (PSI), 10/17/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Nicole Neveu, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Nicole Neveu, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Adelmann Andreas (PSI), 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Nicole Neveu, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Error compiling GCC 5.4 for opal on RHEL-6, PSI, 10/18/2017
- Re: [Opal] Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Error compiling GCC 5.4 for opal on RHEL-6, PSI, 10/18/2017
- Re: [Opal] Error compiling GCC 5.4 for opal on RHEL-6, Christopher Mayes, 10/18/2017
- Re: [Opal] Fwd: Error compiling GCC 5.4 for opal on RHEL-6, Nicole Neveu, 10/18/2017
Archive powered by MHonArc 2.6.19.