H5Part development and discussion

[Kurt Stockinger <kstockinger AT lbl.gov>]

Achim Gsell wrote:
> On Wednesday 18 April 2007 17:48, Wes Bethel wrote:
>   
>> Kurt kindly put a tarball in a location accessible to me
>> pending resolution of the "how does a normal Joe User gain
>> access to the SVN repository at PSI" problem:
>> http://vis.lbl.gov/Research/AcceleratorSAPP/Downloading.html
>>
>> When attempting to build it, I ran into some snags.
>>
>> 1. There is no longer a configure file included in the
>> tarball. The README needs to be updated to reflect that you
>> must first run autogen.sh, which will produce a configure
>> file.
>>     
>
> Ther *is* a configure script in the tarball - if you create the 
> tarball in the right way. The tarball *must* be created as I 
> described in a former email. 
>   
I've created a tarball based on the tagged version in SVN. Can you point
me to the email so that I can create a tarball for Wes? I guess, I was
not on the mailing list yet when you've send this email.

Thanks,
Kurt
>   
>> 2. Outright build failure of the homdynToH5p utility:
>>
>> mpiCC -DPARALLEL_IO -DH5_HAVE_PARALLEL -DMPICH_IGNORE_CXX_SEEK
>> -I/usr/local/hdf5-mpich/include -I/home/tmp/H5Part-1.3.1/src 
>> -g -c homdynToH5p.cc
>> cc1plus: warning: -fhandle-exceptions has been renamed
>> -fexceptions (and is now on by default)
>> /usr/local/mpich/include/mpi2c++/mpi2c++_map.h:36: error:
>> template with C linkage
>> /usr/local/mpich/include/mpi2c++/functions.h:70: error:
>> declaration of C function ‘void PMPI::Init()’ conflicts with
>> /usr/local/mpich/include/mpi2c++/functions.h:67: error:
>> previous declaration ‘void PMPI::Init(int&, char**&)’ here
>> /usr/local/mpich/include/mpi2c++/functions.h:70: error:
>> declaration of C function ‘void MPI::Init()’ conflicts with
>> /usr/local/mpich/include/mpi2c++/functions.h:67: error:
>> previous declaration ‘void MPI::Init(int&, char**&)’ here
>> /usr/local/mpich/include/mpi2c++/functions_inln.h:105: error:
>> ‘void PMPI::Init(int&, char**&)’ should have been declared
>> inside ‘PMPI’
>> /usr/local/mpich/include/mpi2c++/functions_inln.h: In function
>> ‘void PMPI::Init(int&, char**&)’:
>> /usr/local/mpich/include/mpi2c++/functions_inln.h:105: error:
>> declaration of C function ‘void PMPI::Init(int&, char**&)’
>> conflicts with
>> /usr/local/mpich/include/mpi2c++/functions.h:70: error:
>> previous declaration ‘void PMPI::Init()’ here
>> /usr/local/mpich/include/mpi2c++/functions_inln.h: At global
>> scope: /usr/local/mpich/include/mpi2c++/functions_inln.h:112:
>> error: ‘void PMPI::Init()’ should have been declared inside
>> ‘PMPI’ /usr/local/mpich/include/mpi2c++/functions_inln.h: In
>> function ‘void PMPI::Init()’:
>> /usr/local/mpich/include/mpi2c++/functions_inln.h:112: error:
>> declaration of C function ‘void PMPI::Init()’ conflicts with
>> /usr/local/mpich/include/mpi2c++/functions_inln.h:105: error:
>> previous declaration ‘void PMPI::Init(int&, char**&)’ here
>> make[2]: *** [homdynToH5p.o] Error 1.
>>
>> Using these configure options:
>> ./configure --prefix=/usr/local/h5part-mpich --enable-parallel
>> --enable-tools --with-mpipath=/usr/local/mpich
>> --with-hdf5path=/usr/local/hdf5-mpich CC=mpicc CXX=mpiCC
>>     
>
> Same error on our Merlin cluster with mpich2.  I will remove this 
> program from the Makefile and release a new development version 
> tomorrow. We can add it later again. It's a tool written by one 
> of our guys and they have to fix it...
>
> Achim
> _______________________________________________
> H5Part mailing list
> H5Part AT lists.psi.ch
> https://lists.web.psi.ch/mailman/listinfo/h5part
>   


-- 
Kurt Stockinger
Computational Research Division
Lawrence Berkeley National Laboratory
Mail Stop 50F-1650, 1 Cyclotron Road
Berkeley, California 94720, USA

Tel: +1 (510) 486 5519, Fax: +1 (510) 486 5812
email: KStockinger AT lbl.gov
http://sdm.lbl.gov/kurts/