The OPAL Discussion Forum

[CD Genomics <customer AT cdgenomics-mail.com>]

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Dear Researcher,
Next generation sequencing technologies (NGS) have broken many experimental barriers to genome scale sequencing facilitating the extraction of huge amount of sequences but, in some sense they have moved the barriers to the data analysis phase. Our offer is designed to overcome these barriers, and get the most out of your sequencing data:

NGS sequence assembly
The assembly of sequence fragments obtained by NGS technologies requires both considerable computing power and technology-specific algorithms.

Metagenomics data analysis
Metagenomics data are especially difficult to manage but it is undoubtedly a worthwhile challenge, taking into account the amazing results that can be obtained. We offer a specific service for metagenomics data analysis, supported by our cloud based computing infrastructure.

Semiautomatic Bacterial genome annotation
CD Genomics offers a complete annotation of a genome using a semiautomatic system specially designed for bacterial genomes. The system allows the definition of CDSs and their functional annotation based on BLAST similarities. We search for the sequences against the latest release of the UNIPROT protein database, assuring a completely up to date reference sequence set. We also detect and annotate transfer and ribosomal RNAs. Our annotation workflow is under continuous review and update, open to incorporate new useful analysis tools.

Genome assembly refinement
In many cases an expert analysis can improve the automatic assembly provided by the application of the sequencer standard software package. We can improve the quality of the assembly, using alternative algorithms and applying strategies based on functional annotation data.

Statistical analysis
We can help you to face statistical analysis of NGS data. Tell us about your needs and we will design a specific statistical study.

For additional information on the full panel of our custom services, visit us at www.cd-genomics.org.

Felix Leu Felix Leu, Ph.D. CD Genomics Tel: 1-631-626-9181 Email: info AT cd-genomics.org

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