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Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL

From: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>
To: Wei Hou Tan <tanweihou AT outlook.com>, "Gsell Achim (PSI)" <achim.gsell AT psi.ch>
Cc: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>, Philippe Piot <philippe.piot AT gmail.com>, opal <opal AT lists.psi.ch>
Subject: Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL
Date: Wed, 28 Aug 2019 04:13:22 +0000
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Hi Wei Hou I forward this to Achim, he is the master mind

w.r.t. H5hut. I understand correctly that you compiled successfully

hdf5, now question is always does the H5hut build find your compiled version.

@ Achim please have a look at his output. Any idea?

Please send such questions always to opal AT lists.psi.ch, then many more

colleagues are confronted with the problem.

Cheers A

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Dr. sc. math. Andreas (Andy) Adelmann
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Paul Scherrer Institut OHSA/ CH-5232 Villigen PSI
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On 28 Aug 2019, at 00:12, Wei Hou Tan <tanweihou AT outlook.com> wrote:

Hi,

Guten tag.

I am having some troubles in compiling H5hut.

I followed the guide in OPAL wiki to compile parallel version of hdf5-1.10.3.

However, configuring H5hut always result in the following message

checking checking whether hdf5 lib supports parallel IO... no

checking for lustre API ...

checking looking in /usr ... ... no

checking looking in /usr/local ... ... no

checking looking in /usr/local/lustre ... ... no

checking looking in /opt/lustre ... ... no

configure: WARNING: Couldn't locate the lustre API... building without support for lustre striping!

checking if C interface enabled... yes

checking if fortran interface enabled... no

checking if python interface is enabled... no

checking if large indices are enabled... no

checking if parallel interface enabled... yes

configure: error: hdf5 does not support parallel IO!

Have you or some of the OPAL users encounter similar situations before ?

I include Philippe in this email so that he is aware of the situation.

Danke gut.

Regards

Wei Hou

Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL, Adelmann Andreas (PSI), 08/28/2019
- Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL, Christof Metzger-Kraus, 08/28/2019
  - Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL, Wei Hou Tan, 08/28/2019