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Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL


Chronological Thread 
  • From: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>
  • To: Wei Hou Tan <tanweihou AT outlook.com>, "Gsell Achim (PSI)" <achim.gsell AT psi.ch>
  • Cc: "Adelmann Andreas (PSI)" <andreas.adelmann AT psi.ch>, Philippe Piot <philippe.piot AT gmail.com>, opal <opal AT lists.psi.ch>
  • Subject: Re: [Opal] Question about compiling hdf5 and H5hut with parallel option for OPAL
  • Date: Wed, 28 Aug 2019 04:13:22 +0000
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Hi Wei Hou I forward this to Achim, he is the master mind
w.r.t. H5hut. I understand correctly that you compiled  successfully
hdf5, now question is always does the H5hut build find your compiled version.

@ Achim please have a look at his output. Any idea?

Please send such questions always to opal AT lists.psi.ch, then many more
colleagues are confronted with the problem.

Cheers A
------
Dr. sc. math. Andreas (Andy) Adelmann
Head a.i. Labor for Scientific Computing and Modelling 
Paul Scherrer Institut OHSA/ CH-5232 Villigen PSI
Phone Office: xx41 56 310 42 33 Fax: xx41 56 310 31 91
Phone Home: xx41 62 891 91 44
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On 28 Aug 2019, at 00:12, Wei Hou Tan <tanweihou AT outlook.com> wrote:

Hi,

Guten tag.

I am having some troubles in compiling H5hut.
I followed the guide in OPAL wiki to compile parallel version of hdf5-1.10.3.
However, configuring H5hut always result in the following message

checking checking whether hdf5 lib supports parallel IO... no
checking for lustre API ... 
checking looking in /usr ... ... no
checking looking in /usr/local ... ... no
checking looking in /usr/local/lustre ... ... no
checking looking in /opt/lustre ... ... no
configure: WARNING: Couldn't locate the lustre API... building without support for lustre striping!
checking if C interface enabled... yes
checking if fortran interface enabled... no
checking if python interface is enabled... no
checking if large indices are enabled... no
checking if parallel interface enabled... yes
configure: error: hdf5 does not support parallel IO!

Have you or some of the OPAL users encounter similar situations before ?
I include Philippe in this email so that he is aware of the situation.
Danke gut.

Regards
Wei Hou




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