H5Part development and discussion

["Gsell Achim (PSI)" <achim.gsell AT psi.ch>]

Hi Xiaohu

On 03 Jul 2015, at 00:13, Xiaohu Guo <xiaohu.guo AT stfc.ac.uk> wrote:

> Dear Achim,
>     Please neglect my attached config.log. I have reinstalled the
> autoconf automake and libtool. And after I have done autreconf, it now
> seems pass configure successfully and start building now. But now I get
> this error messages during make.
> 
> libtool: link: /usr/local/bin/mpicc -g -O2 -o h5u_test h5u_test.o
> h5u_write.o h5u_read.o testframe.o  -L/usr/local/Cellar/hdf5/1.8.14/lib
> -L/Users/xguo/tools/H5hut-1.99.13/src/lib -lH5hut -lhdf5 -lz -lm
> Undefined symbols for architecture x86_64:
>  "_H5Pset_fapl_mpiposix", referenced from:
>      _h5_open_file in libH5hut.a(h5_openclose.o)
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> make[2]: *** [h5u_test] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> 
> 
> 
> Is this because of using version hdf5-1.8.14 ? Thanks !

Yes. MPIO Posix has been removed from hdf5-1.8.13. You must use hdf5 1.8.12. 
This issue will be fixed in the next version of H5hut.

Best

Achim